BtaEX6024548 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012265 | VWF
Description
Bos taurus von Willebrand factor (VWF), mRNA. [Source:RefSeq mRNA;Acc:NM_001205308]
Coordinates
chr5:104675214-104677103:+
Coord C1 exon
chr5:104675214-104675370
Coord A exon
chr5:104676149-104676307
Coord C2 exon
chr5:104676968-104677103
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGGGGGTCTGCACAGCCC
3' ss Score
4.5
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
Exon sequences
Seq C1 exon
GTGAACCCCGAGCCGTACCTGGATGTTTGCATCTATGACAGCTGCTCCTGCGAGTCCATCGGGGACTGCTCCTGCTTCTGTGACACCATCGCTGCCTATGCCCATGAGTGTGCCCAGCACGGCCAGGTGGTGACCTGGAGGACAGCCACACTGTGCC
Seq A exon
CCCAGAATTGTGAGGAGCGGAACCTGAAGGAGAGTGGGTACCAATGCGAGTGGCGCTACAACAGCTGTGCTCCGGCCTGTCCAGTCACGTGCCAGCACCCGGAGCCCCTGGCCTGCCCCGTGCAGTGCGTGGAGGGCTGCCACGCACACTGCCCACCCG
Seq C2 exon
GGAAAATCCTGGACGAGCTTTTGCAGACCTGCGTCAACCCCGAGGACTGCCCTGTGTGCCAGGTGGAGGGCCGGCGCTTAGCCTCCGGGAAGAAAGTGACCCTGAACCCTGGGGACCCTGAGCATTGCCAGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012265-'28-27,'28-25,29-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF087426=C8=FE(69.3=100)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(69.6=72.2)
C2:
PF0182612=TIL=PD(28.6=34.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTACCTGGATGTTTGCAT
R:
AGGGTCACTTTCTTCCCGGAG
Band lengths:
249-408
Functional annotations
There are 1 annotated functions for this event
PMID: 3524673
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: protein cleavage. ELM ID: ELMI000123; ELM sequence: NSC; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]