RnoEX6015170 @ rn6
Exon Skipping
Gene
ENSRNOG00000019689 | Vwf
Description
von Willebrand factor [Source:RGD Symbol;Acc:621759]
Coordinates
chr4:158171136-158173168:+
Coord C1 exon
chr4:158171136-158171292
Coord A exon
chr4:158171691-158171849
Coord C2 exon
chr4:158173033-158173168
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTTTTGTCTCCACAGCCC
3' ss Score
12.73
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGGACCCCGAGCCATACCTGGACATCTGCATTTATGACACTTGCTCCTGTGAGTCCATCGGGGACTGCTCCTGTTTCTGTGACACCATCGCTGCCTATGCCCACGTGTGCGCCCAGCATGGCCAGGTGGTAGCCTGGAGGAAACCCACACTGTGCC
Seq A exon
CCCAGAGCTGTGAAGAAAGGAACGTTCGGGAAAACAGCTATGAGTGTGAGTGGCGCTATAACAGCTGTGCACCCGCCTGCCCGGTCACATGCCAGCACCCTGAGCCTCTGGCTTGTCCTGTACAGTGTGTGGAGGGCTGCCATGCACACTGCCCTCCAG
Seq C2 exon
GGAAAATCCTGGATGAACTTCTGCAGACCTGTGTGGATGCCCAAGACTGCCCTGTGTGTGAGGTGGCTGGTCGGCGCTTGGCTTCCGGGAAGAAAATCACCCTGAGTCCCAATGACCCTCAGCACTGTCAGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019689-'31-30,'31-29,32-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(69.3=100)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(69.6=72.2)
C2:
PF0182612=TIL=PD(28.6=34.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTCCTGTGAGTCCATCG
R:
TTCTGACAGTGCTGAGGGTCA
Band lengths:
250-409
Functional annotations
There are 1 annotated functions for this event
PMID: 3524673
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: protein cleavage. ELM ID: ELMI000123; ELM sequence: NSC; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]