GgaEX6003193 @ galGal3
Exon Skipping
Gene
ENSGALG00000017272 | VWF
Description
NA
Coordinates
chr1:76637891-76640677:-
Coord C1 exon
chr1:76640521-76640677
Coord A exon
chr1:76639832-76639990
Coord C2 exon
chr1:76637891-76638026
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCAATTATTTTATTACATAGCAC
3' ss Score
5.02
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTGAATCCTGAGCCCTACATAGATATTTGCATGTATGACACTTGTGCCTGTGAATCTATTGGAGACTGTGCTTGCTTCTGTGATGCTATAGCAGCCTATGCACATGTCTGTGCACAAAAAGGTGTCATTGTTCACTGGAGATCACCAGATCTGTGCC
Seq A exon
CACAAAGCTGTGAGAACCTAAATAAACAGGAATTAGATTATCAATGTGAATGGAGATACAATAGCTGTGGACCTGCTTGTCCTATAACATGCCAGCACACACAACCTTTGAAGTGCCCTCTACAGTGCGTAGAAGGATGCCATGTTCACTGTCCTGCAG
Seq C2 exon
GGAAAATACTTGATGAACTATCCCTGGATTGTGTTAGACCAGAAGACTGTCCAGTGTGTGCAGTTGGAGGTGTCAAGATCCCACATGGAAGGAGAATAGTTTTAAGCAGAGATGATCCGCAGCACTGTCAATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017272-'25-30,'25-29,26-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(69.3=100)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(69.1=70.4)
C2:
PF0182612=TIL=PD(29.1=34.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATGTATGACACTTGTGCCT
R:
CAGTGCTGCGGATCATCTCTG
Band lengths:
257-416
Functional annotations
There are 1 annotated functions for this event
PMID: 3524673
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: protein cleavage. ELM ID: ELMI000123; ELM sequence: NSC; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]