BtaEX6024849 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021994 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr5:108737834-108761376:-
Coord C1 exon
chr5:108761296-108761376
Coord A exon
chr5:108739495-108739556
Coord C2 exon
chr5:108737834-108737878
Length
62 bp
Sequences
Splice sites
3' ss Seq
CCCGCCCCACTCCCCGGCAGCCG
3' ss Score
6.64
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AAAGTCCCAGCAAGCCTGCGGTGGTGACGGTGAGCACAGCCGTAGCCGTGAGCGTGGACAACAGAACGGCCATCGCTGCAG
Seq A exon
CCGTGGGCGTCCAGATGAGAATGGAATTCCTGCAGCGCAGCTTCTGGGCTGCCACCCGGCAG
Seq C2 exon
TGTGGTGCCGCGGAGGGGCCGTGCCCAGAGAGCTGCCAGGACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021994-'25-26,'25-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTCCCAGCAAGCCTG
R:
ACTGTCCTGGCAGCTCTCTG
Band lengths:
126-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]