RnoEX6014840 @ rn6
Exon Skipping
Gene
ENSRNOG00000008031 | Cacna2d4
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:RGD Symbol;Acc:1562038]
Coordinates
chr4:151372960-151397547:+
Coord C1 exon
chr4:151372960-151373040
Coord A exon
chr4:151396077-151396138
Coord C2 exon
chr4:151397503-151397547
Length
62 bp
Sequences
Splice sites
3' ss Seq
CTCCTTCCTGTTCCCTGCAGCCG
3' ss Score
10.82
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATAGCCCCGGCAAACCAGTGGCGGTAAGGGCCAGCACGGCAATAACTGTGACAGTGGACGGGAAGACGGCCATTGCAGCAG
Seq A exon
CCGTGGGCATCCAGATGCAAGCGGACTACCTCCAGCGCCAGTTCTGGGCAGCCATGCAGCAG
Seq C2 exon
TGCAACACTGTAGAGGGGCCCTGCCCGAAGCGCTGCCAGGACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008031-'36-44,'36-43,39-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCCCCGGCAAACCAGT
R:
GTGTCCTGGCAGCGCTTC
Band lengths:
125-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]