MmuEX6006546 @ mm10
Exon Skipping
Gene
ENSMUSG00000041460 | Cacna2d4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:MGI Symbol;Acc:MGI:2442632]
Coordinates
chr6:119312423-119337926:+
Coord C1 exon
chr6:119312423-119312503
Coord A exon
chr6:119336391-119336452
Coord C2 exon
chr6:119337882-119337926
Length
62 bp
Sequences
Splice sites
3' ss Seq
CTCCTTCCTGTTTCCTGCAGCTG
3' ss Score
11.61
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATAGCCCAGGCAAGCCAGTGGCGGTAAGGGCCAGCACAGCAGTAACTGTGACCGTGGATGGGAAGACGGCCATTGCAGCAG
Seq A exon
CTGTGGGCATCCAGATGCAAGCAGACTACCTCCAGCGCCAGTTCTGGGCAGCCATGCAGCAG
Seq C2 exon
TGCAACGCTGTAGAGGGGCCGTGCCTGAAGAGCTGCGAGGACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041460-'42-85,'42-77,53-85=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000037434fB6903
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCCCAGGCAAGCCAGT
R:
AGTGTCCTCGCAGCTCTTCAG
Band lengths:
126-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types