BtaEX6025278 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016198 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr5:112836486-112838989:+
Coord C1 exon
chr5:112836486-112836657
Coord A exon
chr5:112838364-112838441
Coord C2 exon
chr5:112838880-112838989
Length
78 bp
Sequences
Splice sites
3' ss Seq
ATCTCTCTGTTCTGCTCTAGATG
3' ss Score
10.78
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GCGGAATACTACCACCTGCTAGCTGAGAAGATCTATAAGATTCAGAAGGAACTAGAAGAAAAGCGAAGGACTAGACTACAGAAACAGAACATGCTACCAAGTGCTGCAAGCATGGTGCCAGTTATGAACACAGGGCCTAACATGGGGCAGCCACAACCAGGAATGACTTCTA
Seq A exon
ATGGCCCTCTCCCTGATCCATCTATGATCCGCGGCAGTGTGCCAAACCAGATGATGCCTCGGGTAACTCCACAGCCTG
Seq C2 exon
GTTTGAATCAGTTTGGCCAGATGAGTATGCCTCAGCCCCCTATTGGACCCCGGCAAAACTCTCCTCTTCAGCACCATGTACAGTTAGCTCAAACTGGAACACTTAACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016198-'15-17,'15-15,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.724 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0217211=KIX=PD(23.5=32.8)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000021556fB2453
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCTACCAAGTGCTGCAA
R:
ACTGTACATGGTGCTGAAGAGG
Band lengths:
168-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]