MmuEX6055088 @ mm10
Exon Skipping
Gene
ENSMUSG00000055024 | Ep300
Description
E1A binding protein p300 [Source:MGI Symbol;Acc:MGI:1276116]
Coordinates
chr15:81621062-81624634:+
Coord C1 exon
chr15:81621062-81621236
Coord A exon
chr15:81623448-81623525
Coord C2 exon
chr15:81624525-81624634
Length
78 bp
Sequences
Splice sites
3' ss Seq
ATTTGTGTTTTCCACTCCAGATG
3' ss Score
10.69
5' ss Seq
CTGGTAACG
5' ss Score
6.15
Exon sequences
Seq C1 exon
GCGGAATACTATCACCTCCTAGCCGAGAAGATCTATAAGATCCAGAAGGAACTAGAAGAGAAACGAAGGACTAGACTACAGAAACAGAACATGCTACCGAATGCTCCTGGCATGGGTCCAGTTCCTATGAATACTGGGTCGAACATGGGGCAGCAACCAACAGGAATGACTACCA
Seq A exon
ATGGTCCTGTACCTGACCCGTCTATGATCCGTGGCAGTGTGCCGAACCACATGATGCCTCGGATGACTCCACAGCCTG
Seq C2 exon
GTTTGAATCAATTTGGGCAGATGAATATGCCACAGCCCCCTATTGGACCCCGGCAACCCTCTCCTCTTCAGCACCATGGACAATTGGCTCAGTCTGGGTCACTCAATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055024-'21-23,'21-22,26-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.756 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0217211=KIX=PD(29.0=33.9),PF068866=TPX2=PD(84.2=54.2)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATGGGTCCAGTTCCTAT
R:
AGTGACCCAGACTGAGCCAAT
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types