DreEX0030142 @ danRer10
Exon Skipping
Gene
ENSDARG00000061108 | ep300b
Description
E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
Coordinates
chr3:24899866-24901465:-
Coord C1 exon
chr3:24901378-24901465
Coord A exon
chr3:24900237-24900314
Coord C2 exon
chr3:24899866-24899954
Length
78 bp
Sequences
Splice sites
3' ss Seq
GATCTTCTGGTCTTTCCTAGATG
3' ss Score
9.56
5' ss Seq
CTGGTATGC
5' ss Score
6.73
Exon sequences
Seq C1 exon
GCGGAGTATTACCACTTGTTGGCGGAGAAGATATATAAGATTCAGAAGGAGCTGGAGGAGAAGAGGAGAACCAGACTCCAAAAGCAGG
Seq A exon
ATGGTCCTCATTCAGATCCGTCTTTAGTTCAAGCCACTGGTCCCAGTCAGATGGTCAATCGCATGCAGAATCCTGCTG
Seq C2 exon
GTATGAATCAATTTGGCCAGGTGGGGATGCAGCAACCAATGGGACAGAGGGCCACGCCTCCCCTGCCAATGGGTGCAAACCTCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061108-'9-14,'9-13,10-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0217211=KIX=PD(23.5=63.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTTGTTGGCGGAGAAGAT
R:
TTGAGGTTTGCACCCATTGGC
Band lengths:
162-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]