GgaEX6001954 @ galGal4
Exon Skipping
Gene
ENSGALG00000011992 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr1:49661295-49663714:-
Coord C1 exon
chr1:49663540-49663714
Coord A exon
chr1:49662284-49662361
Coord C2 exon
chr1:49661295-49661404
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCCAGTATCTTTTTTTACAGATG
3' ss Score
8.11
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GCAGAGTATTATCACTTGCTAGCTGAGAAGATCTATAAGATTCAGAAGGAGCTGGAGGAAAAGCGAAGAACCAGGCTGCAGAAGCAAAACATGATACCAAGTGCTCCAGGCATGCCACAGGCTCCTGTGAATCAAGGGCCCAACATGGGACAGCCTCAGCCAGGGATGTCTGCAA
Seq A exon
ATGGTCCTATAACTGACCCAACACTGATACGTGCGAATGTGCCAAACCAGATGATGAATCGCATGCAGGCACAGCCAG
Seq C2 exon
GAATGAATCAGTTTGGCCACATGAACATGCAGCTGTCACCGATGGGACCCCGGCAAACCCCTCCTCTTCAGCACCCTGGACAGCTAAGCCAGGCCGGGGCCATGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011992-'15-17,'15-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.746 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0217211=KIX=PD(23.5=32.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGGAGGAAAAGCGAAG
R:
ATCGGTGACAGCTGCATGTTC
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]