DreEX0030125 @ danRer10
Exon Skipping
Gene
ENSDARG00000100666 | ep300a
Description
E1A binding protein p300 a [Source:ZFIN;Acc:ZDB-GENE-080403-16]
Coordinates
chr12:18824189-18825796:-
Coord C1 exon
chr12:18825613-18825796
Coord A exon
chr12:18824644-18824721
Coord C2 exon
chr12:18824189-18824259
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTTGCTCCCTTGTAGATG
3' ss Score
10.7
5' ss Seq
CTGGTTTGT
5' ss Score
4.29
Exon sequences
Seq C1 exon
GCGGAGTATTATCACTTTCTGGCAGAGAAGATCTATAAAATTCAGAAAGAACTGGAAGAGAAGCGAAGGACACGGTTACAGAAGCAGGGTATAATGCCCTCCCAGGCTGGCATGAACCCCTCTGGCCTGCAGCAAGCGACCGCTGGGATTGGTCAGCCTGGGCCACCCACAGGACTGCCTTCTA
Seq A exon
ATGGCCCACTATCAGATCCATCAGTAGTGCGTCCAACTGGCCCAAACCAGATGATGAACAGAATGCAGAATACTGCTG
Seq C2 exon
GGATGAATTCATTTGGGAATCATATGGGAATGCAGTCCATGGGCCAGAGATCAACACCACCTCTTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100666-'13-15,'13-14,15-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.742 A=0.903 C2=1.000
Domain overlap (PFAM):
C1:
PF0217211=KIX=PD(23.5=30.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACGGTTACAGAAGCAGGG
R:
GTGTTGATCTCTGGCCCATGG
Band lengths:
173-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]