BtaEX6025283 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016198 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr5:112829749-112833410:+
Coord C1 exon
chr5:112829749-112829862
Coord A exon
chr5:112830730-112830975
Coord C2 exon
chr5:112833317-112833410
Length
246 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTCTGTTTTCCCTAGCAA
3' ss Score
10.22
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
TGGCACACTGTGCATCTTCTCGACAAATCATTTCCCACTGGAAGAATTGTACAAGGCATGATTGTCCTGTGTGTCTCCCCCTGAAAAACGCTGGAGATAAGAGAAATCAACAGT
Seq A exon
CAATTTTGACTGGAGCACCAGTTGGACTTGGCAGTACTAGCTCTCTAGGGGTGGGTCAACAGTCCACTCCCAGCCTAAGCACTGTCAGTCAGATTGATCCCAGCTCTATAGAAAGAGCCTATGCAGCCCTTGGACTGCCCTATCAAGTAAATCAGATGCCGACCCAGCCCCAGGTGCAAGCGAAGAATCAGCAGAACCAGCAGTCTGGGCAGTCTCCCCAAGGGATGCGGCCCATGAGCAACATGA
Seq C2 exon
GTGCTAGTCCTATGGGAGTAAATGGAGGTGTAGGGGTTCAACCGTCGAATCTTCTTTCTGACTCGATGTTGCATTCAGCCATAAATTCTCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016198-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.735 C2=1.000
Domain overlap (PFAM):
C1:
PF0213511=zf-TAZ=PD(32.1=66.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACTGTGCATCTTCTCGACA
R:
TTTGAGAATTTATGGCTGAATGCA
Band lengths:
204-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]