DreEX0030139 @ danRer10
Exon Skipping
Gene
ENSDARG00000061108 | ep300b
Description
E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
Coordinates
chr3:24905964-24910021:-
Coord C1 exon
chr3:24909908-24910021
Coord A exon
chr3:24908787-24909014
Coord C2 exon
chr3:24905964-24906072
Length
228 bp
Sequences
Splice sites
3' ss Seq
ATCTCTCTATTTCTCTTTAGCTC
3' ss Score
9
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
TGGCTCACTGCGCGTCCTCCAGACAGATCATCTCTCATTGGAAGAACTGCACACGGCATGACTGTCCTGTCTGCCTGCCGCTAAAGAGCGCCGGAGACAAAAGAAACCAGCAAT
Seq A exon
CTCTATTGGGAGGTGCTGGGATGGCCATGGGTGGTCCTTTAGGTGGGTCATTACCTGGTGGCCAACCTTCAGCTCCAAACATTAACCCACCCAGTCAGATTGACCCAAGCTCCATCGAGAGGGCGTATGCTGCTCTTGGACTCACTTACCAAGGGAACCAAGCATCCAATCAAAATCAGCAGACCTCTGTACCCGGTCAACCTGGCATGAGGTCGCTCAACAACATGG
Seq C2 exon
CAGGTGGGAACTCAATGGGAGTGAATGGAGGAGTCGGTGCGCCGATGTCAAACCAGCATCCAGGAATGCTGCCCGATGGCATGCTGCACAGGAACATGACCGCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061108-'4-7,'4-6,5-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.870 C2=1.000
Domain overlap (PFAM):
C1:
PF0213511=zf-TAZ=PD(32.1=66.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACTGCGCGTCCTCCAG
R:
CTCTGAGCGGTCATGTTCCTG
Band lengths:
220-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]