GgaEX1022544 @ galGal3
Exon Skipping
Gene
ENSGALG00000011992 | EP300
Description
NA
Coordinates
chr1:51694463-51698391:-
Coord C1 exon
chr1:51698278-51698391
Coord A exon
chr1:51697228-51697464
Coord C2 exon
chr1:51694463-51694556
Length
237 bp
Sequences
Splice sites
3' ss Seq
CTTTGGTGCATCTCTTCTAGCGC
3' ss Score
7.86
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
TGGCACATTGTGCATCTTCTCGACAAATCATCTCGCACTGGAAGAACTGTACAAGACATGACTGTCCTGTATGTTTGCCACTCAAAAATGCTGGGGACAAAAGAAACCAGCAAT
Seq A exon
CGCTACTGGGTGGAGCTGCAGTAGGACTTGCAAACACCGGCTCCGTGGGTGTGGGGCAGCAGACTACGCCCAGCATAAGCACTACCAGCCAGATAGACCCCAGCTCCATCGAGAGAGCCTATGCAGCCCTTGGACTAACCTATCAAGGGAACCAGATGCAGACACAGTCTCAGGCTCAAGTGAAGAATCAGCAGCAAGGACAGTCACCCCAGGGTCTGCGCCCAATGAATCCTATGA
Seq C2 exon
GTGCAAATCCAATGGGAGTAAATGGAGGAGTAGGAGTTCAAACCCCCAGTCTGCTGCCTGACTCAATGTTACATTCAACCATGAATTCCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011992-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=0.700 C2=1.000
Domain overlap (PFAM):
C1:
PF0213511=zf-TAZ=PD(32.1=66.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATTGTGCATCTTCTCGACA
R:
TTCATGGTTGAATGTAACATTGAGT
Band lengths:
196-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]