GgaEX1022544 @ galGal4
Exon Skipping
Gene
ENSGALG00000011992 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr1:49665430-49669358:-
Coord C1 exon
chr1:49669245-49669358
Coord A exon
chr1:49668195-49668431
Coord C2 exon
chr1:49665430-49665523
Length
237 bp
Sequences
Splice sites
3' ss Seq
CTTTGGTGCATCTCTTCTAGCGC
3' ss Score
7.86
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
TGGCACATTGTGCATCTTCTCGACAAATCATCTCGCACTGGAAGAACTGTACAAGACATGACTGTCCTGTATGTTTGCCACTCAAAAATGCTGGGGACAAAAGAAACCAGCAAT
Seq A exon
CGCTACTGGGTGGAGCTGCAGTAGGACTTGCAAACACCGGCTCCGTGGGTGTGGGGCAGCAGACTACGCCCAGCATAAGCACTACCAGCCAGATAGACCCCAGCTCCATCGAGAGAGCCTATGCAGCCCTTGGACTAACCTATCAAGGGAACCAGATGCAGACACAGTCTCAGGCTCAAGTGAAGAATCAGCAGCAAGGACAGTCACCCCAGGGTCTGCGCCCAATGAATCCTATGA
Seq C2 exon
GTGCAAATCCAATGGGAGTAAATGGAGGAGTAGGAGTTCAAACCCCCAGTCTGCTGCCTGACTCAATGTTACATTCAACCATGAATTCCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011992-'9-10,'9-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=0.700 C2=1.000
Domain overlap (PFAM):
C1:
PF0213511=zf-TAZ=PD(32.1=66.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATTGTGCATCTTCTCGACA
R:
TTCATGGTTGAATGTAACATTGAGT
Band lengths:
196-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]