RnoEX0003429 @ rn6
Exon Skipping
Gene
ENSRNOG00000000190 | AABR07058539.1
Description
NA
Coordinates
chr7:122847495-122852349:+
Coord C1 exon
chr7:122847495-122847608
Coord A exon
chr7:122849248-122849493
Coord C2 exon
chr7:122852256-122852349
Length
246 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTGTCTTTTCTAGCAA
3' ss Score
11.2
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
TGGCACATTGTGCGTCTTCTCGACAAATCATTTCACACTGGAAAAATTGCACAAGGCATGATTGTCCTGTGTGTCTTCCTCTCAAAAATGCTGGGGATAAGCGAAATCAACAGT
Seq A exon
CAATTTTGACTGGAGCACCAGTCGGGCTTGGAAACCCTAGCTCTCTAGGAGTGGGACAGCAGTCCACCCCTAGCCTAAGCACTGTCAGTCAGATTGATCCCAGCTCTATAGAGCGAGCTTATGCTGCTCTCGGACTACCCTATCAAGTAAACCAGATTCCACCACAACCCCCCGTCCAAGCTAAGAATCAACAAAGTCAGCCGTCTGGACAGTCTCCCCAAGGCATGCGGTCCATGAACAACATGA
Seq C2 exon
GTGCCAGTCCTATGGGTGTAAATGGAGGTGTAGGGGTTCAGACACCGAATCTTCTTTCTGACTCCATGTTGCATTCAACCATAAATTCTCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000190-'11-12,'11-11,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.807 C2=1.000
Domain overlap (PFAM):
C1:
PF0213511=zf-TAZ=PD(32.1=66.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGTGCGTCTTCTCGACA
R:
TTCTGAGAATTTATGGTTGAATGCA
Band lengths:
204-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]