BtaEX6025474 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011275 | SCUBE1
Description
signal peptide, CUB domain, EGF-like 1 [Source:HGNC Symbol;Acc:HGNC:13441]
Coordinates
chr5:114678025-114697070:-
Coord C1 exon
chr5:114696945-114697070
Coord A exon
chr5:114692769-114692885
Coord C2 exon
chr5:114678025-114678141
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGCACTCGGGGCCTCACTAGTAA
3' ss Score
0.87
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
AGGGTATGAACTGCATGAACAAAGACCATGGCTGTGCCCACATCTGCCGGGAGACGCCCAAAGGTGGGGTGGCCTGCGACTGCAGGCCCGGCTTTGACCTTGCCCAAAACCAGAAGGACTGCACAC
Seq A exon
TAACCTGTAACTATGGGAACGGAGGCTGCCAGCACAGCTGTGAGGACACGGACACGGGCCCCACGTGCGGCTGCCACCAGAAGTACGCCCTGCACTCAGACGGCCGGACGTGCATCG
Seq C2 exon
AGACATGTGCGGTGAACAACGGAGGCTGCGACCGGACGTGTAAGGACACCGCCACCGGCGTGCGCTGCAGCTGCCCCGTGGGGTTCACGCTGCAGCCGGACGGGAAGACGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011275-'3-6,'3-4,4-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=86.0)
A:
PF146701=FXa_inhibition=WD(100=90.0)
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTATGAACTGCATGAACA
R:
CTTTGCACGTCTTCCCGTCC
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]