BtaEX0031628 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011275 | SCUBE1
Description
signal peptide, CUB domain, EGF-like 1 [Source:HGNC Symbol;Acc:HGNC:13441]
Coordinates
chr5:114678025-114692885:-
Coord C1 exon
chr5:114692769-114692885
Coord A exon
chr5:114690000-114690089
Coord C2 exon
chr5:114678025-114678141
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTCCCTTACTTGTGTTTTAGAAA
3' ss Score
9.83
5' ss Seq
TGGGTAACA
5' ss Score
3.35
Exon sequences
Seq C1 exon
TAACCTGTAACTATGGGAACGGAGGCTGCCAGCACAGCTGTGAGGACACGGACACGGGCCCCACGTGCGGCTGCCACCAGAAGTACGCCCTGCACTCAGACGGCCGGACGTGCATCG
Seq A exon
AAAAGGATGAGGCTGCAATTGAGCGCTCTCAGTTCAATGCCACGTCAGTAGCTGATGTGGACAAGCGGGTGAAACGGCGGCTCCTCATGG
Seq C2 exon
AGACATGTGCGGTGAACAACGGAGGCTGCGACCGGACGTGTAAGGACACCGCCACCGGCGTGCGCTGCAGCTGCCCCGTGGGGTTCACGCTGCAGCCGGACGGGAAGACGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011275_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Inclusion Isoform:
ENSBTAT00000037639fB6174
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTGCCACCAGAAGTAC
R:
CTTTGCACGTCTTCCCGTCC
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development