HsaEX0056660 @ hg38
Exon Skipping
Gene
ENSG00000159307 | SCUBE1
Description
signal peptide, CUB domain and EGF like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:13441]
Coordinates
chr22:43238838-43258335:-
Coord C1 exon
chr22:43258219-43258335
Coord A exon
chr22:43255488-43255577
Coord C2 exon
chr22:43238838-43238954
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTCCCTTACTTGTGTTTTAGAGA
3' ss Score
9.51
5' ss Seq
TGGGTAACA
5' ss Score
3.35
Exon sequences
Seq C1 exon
TAACCTGTAATTATGGAAACGGAGGCTGCCAGCACAGCTGTGAGGACACAGACACAGGCCCCACGTGTGGTTGCCACCAGAAGTACGCCCTCCACTCAGACGGTCGCACGTGCATCG
Seq A exon
AGAAGGATGAGGCTGCAATTGAGCGCTCTCAGTTCAATGCCACGTCAGTAGCTGATGTGGACAAGCGGGTGAAACGGCGGCTACTCATGG
Seq C2 exon
AGACGTGCGCAGTCAATAACGGAGGCTGCGACCGGACATGCAAGGACACAGCCACTGGCGTGCGATGCAGCTGCCCCGTTGGATTCACACTGCAGCCGGACGGGAAGACATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159307_MULTIEX2-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.001
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGACACAGACACAGGC
R:
CTGCAGTGTGAATCCAACGGG
Band lengths:
173-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development