DreEX0064625 @ danRer10
Exon Skipping
Gene
ENSDARG00000063097 | scube1
Description
signal peptide, CUB domain, EGF-like 1 [Source:ZFIN;Acc:ZDB-GENE-050302-78]
Coordinates
chr4:8936283-8950803:-
Coord C1 exon
chr4:8950687-8950803
Coord A exon
chr4:8943266-8943355
Coord C2 exon
chr4:8936283-8936399
Length
90 bp
Sequences
Splice sites
3' ss Seq
CCCTGTCACTTGTGTTTTAGAGA
3' ss Score
9.42
5' ss Seq
TGGGTAACT
5' ss Score
4.34
Exon sequences
Seq C1 exon
TGACATGTAACTATGGAAATGGTGGTTGCCAACACACGTGCGACGACACTGACGTGGGGCCCATTTGTGGATGCCATCAGAAATATGCCCTGCATTCAGACAGCAAGACCTGCATTG
Seq A exon
AGAAAGATGAGGCTGCAATTGAGAGCTCTGAATTCAATACCACGTCAGTAGCTGATGTGGACAAGCGGGTGAAACGTCGTCTACTTATGG
Seq C2 exon
AGACCTGTGCGGTGAACAACGGCGGCTGCGATCGCACTTGCAAGGACACGGCGACTGGTGTCCGCTGCAGTTGTCCCGTGGGCTTCACCCTTCAACCCGATGGCAAAACCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063097_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATTTGTGGATGCCATCA
R:
AGGTTTTGCCATCGGGTTGAA
Band lengths:
170-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]