GgaEX0020908 @ galGal4
Exon Skipping
Gene
ENSGALG00000014178 | SCUBE1
Description
signal peptide, CUB domain, EGF-like 1 [Source:HGNC Symbol;Acc:HGNC:13441]
Coordinates
chr1:68782428-68801465:-
Coord C1 exon
chr1:68801349-68801465
Coord A exon
chr1:68798372-68798461
Coord C2 exon
chr1:68782428-68782544
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTCCCTTACTTGTGTTTTAGAGA
3' ss Score
9.51
5' ss Seq
TGGGTAACA
5' ss Score
3.35
Exon sequences
Seq C1 exon
TAACCTGTAACTATGGGAATGGAGGCTGCCAGCACACCTGTGATGACACTGATACTGGTCCTGTGTGTGGTTGTCATCAGAAGTATGCCCTGCATTCAGATGGACGAACCTGCATTG
Seq A exon
AGAAGGATGAGGCTGCAATTGAGAGTTCTGAGTACAATGCCACGTCAGTAGCTGATGTGGACAAGCGGGTGAAACGGCGGCTACTTATGG
Seq C2 exon
AAACATGTGCTGTCAATAATGGAGGCTGTGATCGGACTTGCAAGGATACCGCGACAGGGGTACGATGCAGTTGCCCAGTTGGATTTACCCTGCAGCCTGATGGGAAAACGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014178_MULTIEX1-2/3=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Inclusion Isoform:
ENSGALT00000022933fB2553
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTATGGGAATGGAGGCTGC
R:
CAACTGCATCGTACCCCTGTC
Band lengths:
182-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]