MmuEX0041330 @ mm9
Exon Skipping
Gene
ENSMUSG00000016763 | Scube1
Description
signal peptide, CUB domain, EGF-like 1 [Source:MGI Symbol;Acc:MGI:1890616]
Coordinates
chr15:83469134-83484715:-
Coord C1 exon
chr15:83484599-83484715
Coord A exon
chr15:83482085-83482174
Coord C2 exon
chr15:83469134-83469250
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTCCCTTACTTGTGTTCTAGAGA
3' ss Score
8.81
5' ss Seq
TGGGTAACA
5' ss Score
3.35
Exon sequences
Seq C1 exon
TAACCTGTAACTATGGAAACGGAGGCTGTCAGCACAGCTGCGAGGACACGGACACGGGCCCCATGTGTGGCTGCCACCAGAAGTACGCCTTACATGCAGATGGTCGGACGTGCATCG
Seq A exon
AGAAGGATGAGGCTGCAATTGAGCGCTCTCAGTTCAATGCCACGTCAGTAGCTGATGTGGACAAGCGGGTGAAACGGCGGCTCCTCATGG
Seq C2 exon
AGACATGTGCAGTGAACAACGGAGGCTGTGACCGGACGTGTAAGGACACTGCCACTGGCGTGCGGTGCAGCTGCCCGGTTGGATTCACGCTGCAGCCAGATGGAAAGACATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016763_MULTIEX1-5/9=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTATGGAAACGGAGGCTGT
R:
CCAGTGGCAGTGTCCTTACA
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: