BtaEX6026443 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009786 | SCIN
Description
scinderin [Source:HGNC Symbol;Acc:HGNC:21695]
Coordinates
chr4:20219781-20226990:+
Coord C1 exon
chr4:20219781-20219951
Coord A exon
chr4:20226395-20226572
Coord C2 exon
chr4:20226869-20226990
Length
178 bp
Sequences
Splice sites
3' ss Seq
TATTTTTCTTCATACTCTAGGTA
3' ss Score
9.58
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
ATTCGAGTCTCCCAAGGCAAAGAACCTGCTCACCTGCTGAGTTTGTTCAAAGACAAACCGCTCATTATTTACAAGAACGGAACATCAAAGAAAGAAGGTCAGGCACCAGCCCCCCCTATACGCCTCTTTCAAGTCCGAAGAAACCTGGCTTCGATCACCAGAATTATGGAG
Seq A exon
GTAGATGTTGATGCAAACTCATTGAATTCCAATGATGTTTTTGTCCTGAAACTGCGACAAAATAATGGCTACATCTGGATAGGAAAAGGCTCCACACAGGAGGAGGAGAAAGGAGCAGAGTACGTGGCAAGCGTCCTCAAATGCAAAACTTCGACGATTCAGGAAGGCAAGGAACCAG
Seq C2 exon
AGGAGTTTTGGAATTCCCTTGGAGGGAAAAAAGACTACCAGACCTCTCCTCTGCTAGAATCCCAGGCTGAAGACCATCCACCTCGGCTTTACGGCTGCTCCAACAAAACTGGAAGATTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009786-'14-14,'14-12,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=0.050 C2=0.463
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(15.2=21.1),PF0062617=Gelsolin=PU(7.2=8.8)
A:
PF0062617=Gelsolin=FE(85.5=100)
C2:
PF0062617=Gelsolin=PD(4.3=7.3),PF0062617=Gelsolin=PU(1.3=2.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGCAAAGAACCTGCTCA
R:
TAAAGCCGAGGTGGATGGTCT
Band lengths:
251-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]