MmuEX6080805 @ mm10
Exon Skipping
Gene
ENSMUSG00000002565 | Scin
Description
scinderin [Source:MGI Symbol;Acc:MGI:1306794]
Coordinates
chr12:40068915-40073472:-
Coord C1 exon
chr12:40073302-40073472
Coord A exon
chr12:40069269-40069446
Coord C2 exon
chr12:40068915-40069036
Length
178 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCCCTCATACCCTAGGTT
3' ss Score
10.4
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTCCGTGTCTCTCAAGGCAAAGAGCCTGCTCACCTGCTGAGTTTGTTCAAAGACAAACCACTCATTATTTATAAGAATGGGACATCCAAGAAAGAAGGGCAGGCACCGGCTCCCCCTACACGCCTTTTTCAAGTCCGGAGGAACCTGGCATCTATCACCAGAATTGTGGAG
Seq A exon
GTTGACGTTGATGCAAATTCATTAAATTCTAATGACACTTTTGTCCTAAAACTGCCACGAAACAATGGCTTCATCTGGATAGGAAAAGGTGCTAGCCAGGAGGAGGAGAAAGGAGCAGAGTATGTGGCTGATGTCCTCAAGTGCAAAGCTTCAAGAATTCAAGAAGGCAAGGAACCAG
Seq C2 exon
AGGAATTCTGGAACTCTCTTGGAGGGAGGGGAGACTACCAGACTTCACCATTGCTAGAAACTCGGGCTGAAGACCATCCACCTCGGCTTTATGGTTGCTCCAACAAAACTGGAAGATTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002565-'17-14,'17-13,19-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=0.017 C2=0.463
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(15.2=21.1),PF0062617=Gelsolin=PU(8.6=10.5)
A:
PF0062617=Gelsolin=FE(84.3=100)
C2:
PF0062617=Gelsolin=PD(4.3=7.3),PF0062617=Gelsolin=PU(1.3=2.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGTGTCTCTCAAGGCAAA
R:
TGGTCTTCAGCCCGAGTTTCT
Band lengths:
247-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types