GgaEX1051127 @ galGal3
Exon Skipping
Gene
ENSGALG00000010770 | ADSV_CHICK
Description
NA
Coordinates
chr2:26770488-26771903:+
Coord C1 exon
chr2:26770488-26770658
Coord A exon
chr2:26771138-26771315
Coord C2 exon
chr2:26771782-26771903
Length
178 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCTTGATGTTCTAGGTT
3' ss Score
11.32
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
ATTCGAGTCAGTCAAGGCAAAGAACCTCCCCATTTACTGAGCCTGTTCAAAAATAAACCACTTATTGTCTACAAGAATGGAACATCCAAGAAGGAAGGTCAGAAACCTGCTCCACCCACACGGCTCTTCCAAATACGCAGGAACCTAATGTCCGTTACCAGGATTGCTGAG
Seq A exon
GTTGATGTTGATGCAATGTCACTGAATTCCAATGATGCCTTTGTTCTGAAACTTCCAAACAACACTGGTTACACCTGGGTGGGAAAAGGAGTAAACAAAGAAGAGGAACAAGGAGCTCAATACATTGCCAGTGTTCTTAAGTGCCAGACTGCTAAGATTAATGAAGGCCAGGAACCAG
Seq C2 exon
AGGAATTCTGGAAAGCACTTGGAGGTAAAAAAAAATATCAGACTTCATCTCAGCTTTTGACAAAGGCTGAAGATCATCCTCCTCGCCTGTTTGGTTGTTCTAATAAGACCGGCAGATTTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010770-'15-13,'15-12,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=0.083 C2=0.146
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(15.2=21.1),PF0062617=Gelsolin=PU(8.6=10.5)
A:
PF0062617=Gelsolin=FE(84.3=100)
C2:
PF0062617=Gelsolin=PD(4.3=7.3),PF0062617=Gelsolin=PU(1.3=2.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAAGGCAAAGAACCTCCCC
R:
ACAGGCGAGGAGGATGATCTT
Band lengths:
251-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]