DreEX0064453 @ danRer10
Exon Skipping
Gene
ENSDARG00000010728 | scin
Description
scinderin [Source:ZFIN;Acc:ZDB-GENE-060503-6]
Coordinates
chr19:31761341-31762550:-
Coord C1 exon
chr19:31762380-31762550
Coord A exon
chr19:31761877-31762054
Coord C2 exon
chr19:31761341-31761462
Length
178 bp
Sequences
Splice sites
3' ss Seq
GTTGGTTTGTGGTCTAACAGGTG
3' ss Score
7.74
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTAAGAGTGACTCAAGGAAAGGAACCACCTCATTTGCTGAGCCTCTTCAAAGACAAGCCTTTGATTGTGTATAAAGATGGGACATCTAGAAAAGGAGGACAGGCTCCTGCAGCTCCAACCCGCCTCTTTCAAGTGCGCAAGAACCTGGGAACCATTACAAGGATTAGTGAG
Seq A exon
GTGGATGCTAAAGCATCAAGTTTGAACAGCAATGATGTCTATCTGCTGAAGTTACCTCAGGGAGATGGGTACATTTGGAAGGGAAAGGGGGCCAGTGAAGAAGAGGAAAAAGCTGCAAAGTACATGAGCGAGAAGCTGAACTGCAAAACCAAAATGGTTGTTGAAGGAAAGGAGCCAG
Seq C2 exon
ATGTCTTTTGGATGGCTCTGGGTGGAAAGACAGAGTATCAGACGTCTGGCTTGTTGGAGAGTAGAACTATAGCACATCCTCCTCGACTGTTCGCCTGCTCCAACAAAACTGGAAAGTTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010728-'11-12,'11-10,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.092 C2=0.049
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(15.2=21.1),PF0062617=Gelsolin=PU(8.6=10.5)
A:
PF0062617=Gelsolin=FE(84.3=100)
C2:
PF0062617=Gelsolin=PD(4.3=7.3),PF0062617=Gelsolin=PU(1.3=2.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCTCTTCAAAGACAAGCC
R:
AGTTTTGTTGGAGCAGGCGAA
Band lengths:
244-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]