RnoEX0078455 @ rn6
Exon Skipping
Gene
ENSRNOG00000004498 | Scin
Description
scinderin [Source:RGD Symbol;Acc:735034]
Coordinates
chr6:59984008-59988603:-
Coord C1 exon
chr6:59988433-59988603
Coord A exon
chr6:59984361-59984538
Coord C2 exon
chr6:59984008-59984129
Length
178 bp
Sequences
Splice sites
3' ss Seq
TGTTTCCCCTCATGCCCTAGGTT
3' ss Score
10.4
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTTCGTGTGTCTCAAGGCAAAGAGCCTGCTCACCTGCTGAGTTTGTTCAAAGACAAACCACTCATTATTTATAAGAACGGGACATCTAAGAAAGGAGGGCAGGCACCGGCTCCCCCTACACGCCTCTTTCAAGTCCGGAGGAACCTGGCATCTATCACTAGAATCGTGGAG
Seq A exon
GTTGATGTGGATGCAAATTCATTGAATTCTAATGACACTTTTGTCCTGAAACTGCCACGAAACAATGGCTTCATCTGGATAGGAAAAGGGGCTAGCCAGGAGGAGGAGAAAGGAGCAGAGTATGTGGCTGATGTCCTCAAATGCAAAACCACAAGAATTCAAGAAGGCAAGGAACCAG
Seq C2 exon
ATGAATTCTGGAACTCTCTTGGAGGAAGAGGAGACTACCAGACTTCACCATTGCTGGAAACACAGGCTGAAGATCATCCTCCTCGGCTTTATGGCTGCTCTAACAAAACTGGAAGATTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004498_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.033 C2=0.488
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(15.2=21.1),PF0062617=Gelsolin=PU(8.6=10.5)
A:
PF0062617=Gelsolin=FE(84.3=100)
C2:
PF0062617=Gelsolin=PD(4.3=7.3),PF0062617=Gelsolin=PU(1.3=2.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGTGTCTCAAGGCAAAGA
R:
TCTTCAGCCTGTGTTTCCAGC
Band lengths:
242-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]