DreEX6021781 @ danRer10
Exon Skipping
Gene
ENSDARG00000102415 | scinla
Description
scinderin like a [Source:ZFIN;Acc:ZDB-GENE-030131-2005]
Coordinates
chr6:23994211-23994851:-
Coord C1 exon
chr6:23994681-23994851
Coord A exon
chr6:23994420-23994594
Coord C2 exon
chr6:23994211-23994326
Length
175 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTTCTCACCCAGGTG
3' ss Score
11.17
5' ss Seq
CGGGTGGGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
GTACGTGTCACTCAAGGCCAGGAACCAGCCCATTTGATGAGTCTGTTCAAGGGCAAGCCCATGATCATCCACTTGGGTGGGACTTCACGTAAAGGTGGCCAGAGTCGAGTTGGCACTACCCGCCTCTTCCACATCCGCCAGAGCTCCACCCGTGCAACACGCGCTGTGGAG
Seq A exon
GTGGAACCATGTGCATCTAAACTGAACACTAATGATGTGTTTGTGCTGAAGTTTCCTGAAGGCATGTTTCTGTGGAAAGGAGTTGGTGCTTCAGATGAAGAAATCGCTGCTGCAAAATATGTTTGCAGCATCCTTGGAGGCAGTGCCACGGAAATTTCAGAGGGCAAAGAGCCGG
Seq C2 exon
CTGCCTTTTGGTCTTCTTTGGGTGGAAAGAAGGATTATCAGACCTCCAAAAATCTGCAGAAGACAGTTAAACTTCCTCGCCTCTTTGGCTGCTCCAACAAGACTGGACGTCTAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102415-'12-16,'12-14,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(14.5=21.1),PF0062617=Gelsolin=PU(8.7=10.5)
A:
PF0062617=Gelsolin=FE(84.1=100)
C2:
PF0062617=Gelsolin=PD(4.3=7.7),PF0062617=Gelsolin=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTCTGTTCAAGGGCAAGC
R:
GACGTCCAGTCTTGTTGGAGC
Band lengths:
245-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]