MmuEX6100838 @ mm10
Exon Skipping
Gene
ENSMUSG00000026879 | Gsn
Description
gelsolin [Source:MGI Symbol;Acc:MGI:95851]
Coordinates
chr2:35302491-35304388:+
Coord C1 exon
chr2:35302491-35302661
Coord A exon
chr2:35303168-35303342
Coord C2 exon
chr2:35304264-35304388
Length
175 bp
Sequences
Splice sites
3' ss Seq
CTGTCCCACTCCACCTCCAGGTG
3' ss Score
11.61
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
AGCCGAGTGGTCCAAGGCAAAGAGCCTGCACACCTCATGAGCTTGTTTGGCGGGAAGCCCATGATCATCTACAAGGGTGGCACCTCCCGTGATGGTGGGCAGACAGCTCCTGCCAGTATCCGCCTCTTCCAAGTGCGAGCCAGCAGCTCTGGAGCCACCAGGGCTGTGGAG
Seq A exon
GTGATGCCTAAGTCTGGTGCTCTGAACTCCAACGATGCCTTTGTGCTGAAAACCCCCTCCGCTGCCTACCTGTGGGTGGGCGCAGGAGCCAGTGAGGCGGAGAAGACCGGCGCCCAGGAGCTTCTGAAGGTGCTTCGGTCCCAGCATGTGCAGGTGGAAGAAGGCAGTGAGCCAG
Seq C2 exon
ATGCCTTCTGGGAGGCTCTGGGCGGGAAGACTGCCTACCGCACATCCCCCAGGCTTAAGGACAAGAAGATGGATGCCCATCCTCCTCGACTCTTTGCCTGCTCCAACAGGATCGGACGCTTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026879-'66-64,'66-60,72-64
Average complexity
S
Mappability confidence:
100%=83=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.118 C2=0.143
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(14.5=21.1),PF0062617=Gelsolin=PU(17.1=10.5)
A:
PF0062617=Gelsolin=FE(84.1=100)
C2:
PF0062617=Gelsolin=PD(4.3=7.1),PF0062617=Gelsolin=PU(1.3=2.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACACCTCATGAGCTTGT
R:
CTGTTGGAGCAGGCAAAGAGT
Band lengths:
255-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types