RnoEX0040298 @ rn6
Exon Skipping
Gene
ENSRNOG00000018991 | Gsn
Description
gelsolin [Source:RGD Symbol;Acc:1303089]
Coordinates
chr3:14503900-14505812:+
Coord C1 exon
chr3:14503900-14504070
Coord A exon
chr3:14504583-14504757
Coord C2 exon
chr3:14505688-14505812
Length
175 bp
Sequences
Splice sites
3' ss Seq
CCGTCCCACCCCGCCTCCAGGTA
3' ss Score
9.55
5' ss Seq
CAGGTTCGA
5' ss Score
5.36
Exon sequences
Seq C1 exon
AGCCGAGTGGTCCAAGGCAAAGAGCCTGCACACCTCATGAGCTTGTTTGGTGGGAAGCCCATGATCATCTACAAGGGCGGCACCTCCCGAGATGGTGGGCAGACAACCCCTGCCAGTACCCGCCTCTTCCAAGTCCGGGCCAGCAGCTCTGGAGCCACCAGGGCTGTTGAG
Seq A exon
GTAATGCCTAAGGCTGGCGCTCTCAACTCCAATGATGCCTTTGTGCTGAAAACCCCCTCCGCCGCCTACCTGTGGGTGGGTACAGGAGCCAGTGATGCGGAGAAGACCGGCGCCCTGGAGCTGCTGAAGGTGCTGAGGGCCCAGCACGTGCAGGTGGAGGAAGGCAGTGAACCAG
Seq C2 exon
ATGGCTTCTGGGAGGCTCTGGGCGGGAAGACTGCCTACCGCACATCCCCCAGGCTTAAGGACAAGAAGATGGATGCTCATCCTCCTCGCCTCTTCGCCTGCTCCAACAGGATCGGGCGCTTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018991-'31-41,'31-40,32-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=0.119 C2=0.286
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(14.5=21.1),PF0062617=Gelsolin=PU(7.4=8.8)
A:
PF0062617=Gelsolin=FE(85.3=100)
C2:
PF0062617=Gelsolin=PD(4.4=7.1),PF0062617=Gelsolin=PU(1.3=2.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAGCCTGCACACCTCATG
R:
CGAAGAGGCGAGGAGGATGAG
Band lengths:
249-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]