DreEX0036433 @ danRer10
Exon Skipping
Gene
ENSDARG00000011459 | gsna
Description
gelsolin a [Source:ZFIN;Acc:ZDB-GENE-030131-9653]
Coordinates
chr21:17541286-17544001:-
Coord C1 exon
chr21:17543831-17544001
Coord A exon
chr21:17541951-17542125
Coord C2 exon
chr21:17541286-17541407
Length
175 bp
Sequences
Splice sites
3' ss Seq
TTAACCATTCTTTCCTTCAGATT
3' ss Score
10.58
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTGCGTGTGGTCCAGGGTAAAGAACCTGCTCACCTCATGAGTCTATTCGGTGGGCAGCCTATGGTGGTACACAAGGGTGGCACCTCCAGAGAAGGTGGTCAGACGGCGCCAGCAGAGACTCGGCTGTTCCAAGTGCGCTCAAATTCAGCAGGGTGCACTCGAGCTGTAGAG
Seq A exon
ATTGATGCTGTTTCTTCTAATCTGAATTCCAATGATGCCTTCGTCCTGGTGACCCCAGCTGCCTCTTTCATATGGGTTGGTCAAGGAGCCAGTGACATTGAGAAACGTGGCGCACAGCAGCTCTGTGGCATCCTTGGAGTGTCTCCCTCTGAGCTGAGTGAAGGAGGAGAGGATG
Seq C2 exon
GTGGATTCTGGGATGCTCTTGGAGGAAAGGCTGCTTATCGCACATCCTCCAGGCTAAAAGACAAAATGAATGCCCACCCACCACGACTGTTCGCCTGCTCGAACAAAACTGGCCGTTTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011459-'18-15,'18-14,19-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.068 C2=0.073
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(14.5=21.1),PF0062617=Gelsolin=PU(12.0=10.5)
A:
PF0062617=Gelsolin=PD(84.0=71.2)
C2:
PF0062617=Gelsolin=PU(1.3=2.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAGTCTATTCGGTGGGCA
R:
AGTTTTGTTCGAGCAGGCGAA
Band lengths:
246-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]