BtaEX6036327 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019915 | GSN
Description
gelsolin [Source:HGNC Symbol;Acc:HGNC:4620]
Coordinates
chr8:112631011-112633579:+
Coord C1 exon
chr8:112631011-112631181
Coord A exon
chr8:112631811-112631985
Coord C2 exon
chr8:112633455-112633579
Length
175 bp
Sequences
Splice sites
3' ss Seq
ATTGAGCACTACCCTCCCAGGTG
3' ss Score
3.46
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGCCGTGTGGTCCAAGGCAAGGAGCCCGCTCACCTCATGAGCCTGTTTGGCGGGAAACCCATGATCATCTACAGGGGCGGCACCTCCCGCGAGGGTGGGCAGACGGCCCCCGCCAGCACCCGCCTGTTCCAGGTCCGGGCCAGCAGCTCTGGAGCCACCCGAGCCGTGGAG
Seq A exon
GTGATGCCCAAGGCTGGCGCGCTGAATTCCAACGATGCCTTTGTCCTGAAGACCCCCTCGGCCGCCTACCTGTGGGTGGGTGCGGGAGCCAGCGAGGCAGAGAAGACTGGGGCCCTGGAGCTGCTCAGGGTGCTTCGGGCCCAACCCGTGCAGGTGGCAGAAGGCAGCGAGCCAG
Seq C2 exon
ACAGCTTCTGGGAGGCCCTGGGTGGGAAGGCCGCCTACCGCACGTCCCCACGGCTGAAGGACAAGAAGATGGACGCCCACCCTCCTCGCCTCTTTGCCTGCTCCAACAAGATCGGACGTTTCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019915-'33-38,'33-35,36-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.368 A=0.068 C2=0.095
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(14.5=21.1),PF0062617=Gelsolin=PU(7.4=8.8)
A:
PF0062617=Gelsolin=FE(85.3=100)
C2:
PF0062617=Gelsolin=PD(4.4=7.1),PF0062617=Gelsolin=PU(1.3=2.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTCATGAGCCTGTTTGG
R:
TTGTTGGAGCAGGCAAAGAGG
Band lengths:
251-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]