GgaEX6015550 @ galGal3
Exon Skipping
Gene
ENSGALG00000001446 | GSN
Description
NA
Coordinates
chr17:9124660-9126224:+
Coord C1 exon
chr17:9124660-9124830
Coord A exon
chr17:9125638-9125812
Coord C2 exon
chr17:9126100-9126224
Length
175 bp
Sequences
Splice sites
3' ss Seq
GCAACTTTCTTTTTTTTCAGCTG
3' ss Score
9.08
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AAACGAGTAGTGCAAGGAAAAGAGCCACCTCATCTGATGAGCATGTTTGGTGGAAAACCCTTGATTGTTTACAAGGGTGGAACATCTCGGGAAGGAGGCCAGACCACACCAGCACAAACACGGCTGTTCCAGGTCCGGTCCAGCACCTCGGGAGCCACCAGAGCTGTAGAG
Seq A exon
CTGGATCCTGTTGCCAGTCAGCTGAACTCCAATGATGCTTTTGTCCTGAAAACTCCCTCTGCTGCTTACCTCTGGGTTGGCCGAGGCTCCAACAGTGCCGAGCTGTCAGGAGCACAAGAGCTGCTGAAGGTTCTGGGAGCTCGCCCAGTACAGGTTTCCGAGGGTAGAGAGCCAG
Seq C2 exon
ATAACTTTTGGGTGGCTTTGGGTGGAAAAGCTCCCTACCGTACCTCTCCTCGGCTGAAGGACAAGAAGATGGATGCTCACCCCCCTCGTCTTTTTGCGTGCTCCAACAAGAGTGGACGCTTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001446-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.561 A=0.085 C2=0.357
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(14.5=21.1),PF0062617=Gelsolin=PU(7.4=8.8)
A:
PF0062617=Gelsolin=FE(85.3=100)
C2:
PF0062617=Gelsolin=PD(4.4=7.1),PF0062617=Gelsolin=PU(1.3=2.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAAGGAAAAGAGCCACCT
R:
GGGGGTGAGCATCCATCTTCT
Band lengths:
246-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]