DreEX6014092 @ danRer10
Exon Skipping
Gene
ENSDARG00000045262 | gsnb
Description
gelsolin b [Source:ZFIN;Acc:ZDB-GENE-030131-8567]
Coordinates
chr5:62602635-62603312:-
Coord C1 exon
chr5:62603142-62603312
Coord A exon
chr5:62602838-62603012
Coord C2 exon
chr5:62602635-62602756
Length
175 bp
Sequences
Splice sites
3' ss Seq
ATTAATTTTGCCTGAAACAGGTT
3' ss Score
6.02
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
GTGCGAGTAATTCAAGGAAAAGAACCTCTTCAACTCATGAGTATCTTTGGTGGGCAACCAATGGTGGTGTACATGGGGGGGACTTCACGCAAGGGTGGCCAATCAAAAGCTTCTGAAGTCCGTCTTTTCCAAGTGCGTGCCAACCCTGCTGGCCACACACGGGCTGTTGAG
Seq A exon
GTTGATCCTGTGGCCTCCAGCCTGAACTCCAACGATGCCTTTGTTCTAGTGACTCCTTCAGGCTCTACACTGTGGCTAGGTCAGGGTACAAGTGATGCAGAAAAGAATGGAGCCGCGAAGCTTGGCAGCATTTTAGGAGTGACCCTTTCAGAGATATCAGAAGGAGCAGAAGGAG
Seq C2 exon
ATGTCTTCTGGACTGCTCTTGGGGGAAAAGCAGAGTATCGCACCTCTGAAAGGCTCAAAAACAAAATGGACAGCCATCCTCCCAGACTCTTTGCATGTTCCAACAAGACAGGACAACTCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045262-'15-14,'15-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.119 C2=0.171
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(14.5=21.1),PF0062617=Gelsolin=PU(11.1=10.5)
A:
PF0062617=Gelsolin=PD(85.2=78.0)
C2:
PF0062617=Gelsolin=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGAGTATCTTTGGTGGGCA
R:
TCCTGTCTTGTTGGAACATGCA
Band lengths:
250-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]