BtaEX6026610 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30619269-30625218:+
Coord C1 exon
chr4:30619269-30619462
Coord A exon
chr4:30623831-30623993
Coord C2 exon
chr4:30625095-30625218
Length
163 bp
Sequences
Splice sites
3' ss Seq
GGGGTGTTTTCTCTCCGCAGGTG
3' ss Score
12.28
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GGTGTAGCTAGCCATGTGCTGCTTCAGCAGCCCCTCATCTATTGCCATTTTGCTAAGGGCAGCCAAGACCCGTGCTACATGCCGGTGAAGGACTGGGAGGTACTGAAGACGTTTCTGACGGAAGCACTGGATGACTACAATGAACTCAATGCCGCCATGCACCTCGTTTTATTTGAAGACGCCATGCAACATGT
Seq A exon
GTGTCGCATCAGCCGCATCCTGCAGTCCCCTCAGGGTTATGCGCTCTTGATCGGAGTGGGCGGCAGTGGCAAGCAGAGCCTGTCCCGCCTGGCAGCTTACGTTTGCAGCCTCGAGGTCTTCCAGATCACTCTGACCCAAGGCTTTGGGATCCAGGAACTTCGG
Seq C2 exon
GTAGACCTTGCCAATCTGTACATCAGAGCCGGAGCCAAGAACATGCCCACCGCGTTCCTGCTGACAGATGCCCAGGTTCTAGATGAGAGCTTTCTCGTGCTGATTAATGACTTGCTGGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'62-64,'62-63,63-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(7.1=29.2)
A:
PF127802=AAA_8=FE(20.1=100)
C2:
PF127802=AAA_8=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCCCCTCATCTATTGC
R:
GGGCATCTGTCAGCAGGAAC
Band lengths:
243-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]