DreEX6040403 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19459988-19467499:-
Coord C1 exon
chr16:19467303-19467499
Coord A exon
chr16:19467059-19467221
Coord C2 exon
chr16:19459988-19460111
Length
163 bp
Sequences
Splice sites
3' ss Seq
CACATTTTTTTTTTGAGCAGTTG
3' ss Score
4.99
5' ss Seq
AAGGTATCC
5' ss Score
8.33
Exon sequences
Seq C1 exon
GAAATAGAAGAAGACTCAGTGCTGTTTCAGGAGCCTGTAATATACCTGCACAGCAGTCTGGGCTCTGCTGAATCATCTTATAAGCCAGTATCAGGATGGGAGCATCTCACCTGTGTCCTCAATGACGCTCTCAACAACTACAATGAGCTCCACTCCACCATGAACCTGGTGCTGTTCCAGGAAGCCATGCAGCATGT
Seq A exon
TTGTCGGATCAGTCGCATCCTGGCCTGTCCGAGAGGCCATGCCCTGCTTATAGGTGTGGGTGGCAGTGGCAAACAGAGCCTGACCCGCCTTGCCGCACACCTCTCCAACATGGACGTGTTCCAGCCCAAACTCAGTAAGGGATACGGCATACAGGATCTGAAG
Seq C2 exon
ATGGATTTGGCCAGACTGTACATAAAGACAGGAGTGAAAAATATACCCACAGTCTTGCTCCTCACAGACGCTCAGATCCCAGAGGATCAGTTCTTCGTCATCATCAGCACCCTGATCTCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'26-28,'26-27,27-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(7.1=28.8)
A:
PF127802=AAA_8=FE(20.1=100)
C2:
PF127802=AAA_8=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGGGCTCTGCTGAATCA
R:
TCAGGGTGCTGATGATGACGA
Band lengths:
258-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]