MmuEX6083440 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118008735-118012450:-
Coord C1 exon
chr12:118012257-118012450
Coord A exon
chr12:118009989-118010151
Coord C2 exon
chr12:118008735-118008858
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTGCTACTCTCTTTCTCCAGGTG
3' ss Score
12.36
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
GGTGTAGATGCTAATGCGCTGCTGCGGCAGCCCCTTGTCTATTGTCACTTTGCCAGTGGAGGGGAAGACCCTTGTTACATGCCAGTGAAGGACTGGGAAGGGCTAAAGGCAGTTCTTATGGAGATGGTAGACAACTACAACGAACTCCACTCAGCGATGCACCTGGTGCTATTTGAAGACGCCATGCAACACGT
Seq A exon
GTGTAGAATCAGCCGCATCCTTCGGATCCCTCAAGGCCACGCCCTCTTGATTGGCGTTGGAGGCAGTGGCAAGCAGAGCCTGTCCCGGCTGGCAGCTTACATCTGCAGCTTGGAGGTCTTTCAGATCACTCTGACGGAAGGCTATGGGGCCCAAGAGCTTCGG
Seq C2 exon
GTAGATCTGGCCAATTTGTACGTCAGAACTGGAGCCAAAAACATGCCCACCGTGTTCCTGCTGACAGATGCCCACGTTCTAGATGAGAGCTTCCTCGTGCTGATTAACGACTTGCTGGCATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'63-62,'63-61,64-62
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(7.1=29.2)
A:
PF127802=AAA_8=FE(20.1=100)
C2:
PF127802=AAA_8=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGATGCTAATGCGCTGCTGC
R:
AACACGGTGGGCATGTTTTTG
Band lengths:
246-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types