RnoEX6030089 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145912875-145917639:-
Coord C1 exon
chr6:145917446-145917639
Coord A exon
chr6:145914141-145914303
Coord C2 exon
chr6:145912875-145912998
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTGACACTTTCTTTCTCCAGGTG
3' ss Score
12.01
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
GGTGCAGATGCTAACACGCTGCAGCAGCAGCCCCTCGTCTACTGTCACTTTGCCAGTGGCAGGGAAGACCCTTGTTACGAGCCCGTGAAGGACTGGGAAGGGCTAAAGGCAGTTCTTACAGAGATGATGGGCAACTACAATGAGCTGCACTCCGAGATGCACCTCGTGCTCTTTGAAGACGCCATGCAGCACGT
Seq A exon
GTGCCGAATCAGCCGCATTCTTCGGACCCCTCAAGGCCACGCCCTCTTGGTTGGAGTTGGAGGCAGTGGCAAGCAAAGCCTGTCTAGGCTGGCAGCTTACATCTGCAGCTTGGAGGTCTTTCAGATCACTCTGACAGAAGGCTATGGGACCCAAGATCTCCGG
Seq C2 exon
GTAGATCTGGCCAATTTGTACGTCAGAACTGGAGCCAAGAACATGCCCACCGTGTTCCTGCTGACAGATGCCCACGTTCTAGATGAGAGCTTCCTCGTGCTGATTAATGACTTGCTGGCATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'68-67,'68-66,69-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(7.1=29.2)
A:
PF127802=AAA_8=FE(20.1=100)
C2:
PF127802=AAA_8=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCTCGTCTACTGTCACTT
R:
GCTCTCATCTAGAACGTGGGC
Band lengths:
255-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]