GgaEX6015771 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1104629-1109194:+
Coord C1 exon
chr18:1104629-1104825
Coord A exon
chr18:1107262-1107424
Coord C2 exon
chr18:1109071-1109194
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTTTGTATGCTTCAATTTAGTTG
3' ss Score
6.24
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GACATTGAGGAGACCTTAGAGCAGACCAAGCAAATGAATGTTTATTGCCATTTTGCTAAAGGCATTGGCGAACCTAGTTATAGGCCTGTTCCAACCTGGGAGGAGTTGAACCAGATCCTCGTGGAAGCCTTGGAAAACTACAATGAAGTCAATCCTGCCATGAACCTGGTGCTATTTGAGGATGCCATGTGCCATGT
Seq A exon
TTGCCGCATCAACCGTATCCTGGAGTCCCCCAGAGGAAATGCGCTCTTGGTCGGCGTGGGCGGCAGCGGCAAGCAGAGCCTGACCAGGCTGGCAGCCTTCATCAGCTCTCTGGAGGTCTTCCAGATCACTTTGAGGAAAGGCTACGGGATCCCTGACCTGAAG
Seq C2 exon
GCAGACCTGGCAAACCTGTACCTGAAGGCTGGTGTGAAGAACATAGGCACTGTGTTCCTGATGACCGACGTGCAGGTGGCTGATGAGCAGTTCTTGGTGCTGGTAAATGACTTGTTAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'36-38,'36-37,37-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(7.1=28.8)
A:
PF127802=AAA_8=FE(20.1=100)
C2:
PF127802=AAA_8=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAAAGGCATTGGCGAACCT
R:
CCAGCACCAAGAACTGCTCAT
Band lengths:
246-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]