MmuEX6086224 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65965633-65976533:-
Coord C1 exon
chr11:65976337-65976533
Coord A exon
chr11:65969966-65970128
Coord C2 exon
chr11:65965633-65965756
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTTACCCTTTTCCAGCTG
3' ss Score
9.44
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GATAGTGAAGAGGTGCTGAAGCAGACCCAGAACCTGAACATGTATTGTCACTTTGCAAATGGCATTGGTGAGCCCAAGTACATGCCTGTGCAATCATGGGACCTTCTGAATCAGACTCTGGTGGAAGCCCTGGAGAGCCACAATGAAGTGAATGCTGTGATGGACCTAGTTCTCTTTGAGGATGCCATACGTCACAT
Seq A exon
CTGTCACATCAACCGAATCCTGGAGTCCCCTCGAGGAAATGCCCTGCTAGTTGGTGTAGGTGGGAGTGGTAAGCAGAGTCTGACAAAGCTGGCAGCTTTTATCAGTTCCATGGATGTATTCCAGATCACCCTTCGCAAAGGCTACCAAATCCCTGACTTCAAG
Seq C2 exon
GTGGACCTGGCCAGCCTCTGTCTGAAAGCTGGGGTAAAAAATCTCAGTACAGTGTTCCTTATGACTGATGCCCATGTGGCTGACGAGAGGTTCCTGGTGCTCATCAATGACCTCCTGGCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'48-57,'48-56,49-57=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(7.1=28.8)
A:
PF127802=AAA_8=FE(20.1=100)
C2:
PF127802=AAA_8=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATGGCATTGGTGAGCCCA
R:
TGATGAGCACCAGGAACCTCT
Band lengths:
248-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types