BtaEX0011631 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31128490-31134606:+
Coord C1 exon
chr19:31128490-31128686
Coord A exon
chr19:31133439-31133601
Coord C2 exon
chr19:31134483-31134606
Length
163 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTGCTTCTCTCTCAGCTG
3' ss Score
9.43
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GACCTTGGAGAGACTGTGGAGCAGACCCAAAGCCTGAACGTGTATTGCCATTTTGCACACGGTATCGGGGAGCCCAAGTACATGCCTGTCCAGTCGTGGGAACTTCTGACCCAGACGCTGGTGGAGGCCCTGGAGAGCCACAACGAAGTCAACACGGTGATGGACCTGGTGCTCTTCGAGGACGCCGTGCGCCATGT
Seq A exon
CTGCCACATTAATCGCATCCTGGAGTCCCCCCAGGGAAATGCTCTGCTAGTCGGCGTTGGGGGGAGTGGCAAGCAGAGCCTGACCCGGCTGGCGGCTTTCGTCAGCTCCATGGACATATTCCAGATCACATTGCGGAGAGGCTACCAGATCCCGGACTTCAAG
Seq C2 exon
GCGGACCTGGCAGGCTTGTGCCTGAAAGCCGGGGTCAAGAACCTCAGCACCGTGTTTCTCATGACCGATGCCCAAGTGGCTGACGAGAAGTTCCTCGTGTTCATCAACGACCTCTTGGCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'61-71,'61-70,62-71
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(7.1=28.8)
A:
PF127802=AAA_8=FE(20.1=100)
C2:
PF127802=AAA_8=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTTTGCACACGGTATCG
R:
AGGAACTTCTCGTCAGCCACT
Band lengths:
246-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development