DreEX6020688 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10395142-10397464:-
Coord C1 exon
chr6:10397271-10397464
Coord A exon
chr6:10395372-10395534
Coord C2 exon
chr6:10395142-10395265
Length
163 bp
Sequences
Splice sites
3' ss Seq
ACTAGTATGTGTGTGTGTAGTTG
3' ss Score
3.21
5' ss Seq
AGGGTAACA
5' ss Score
4.9
Exon sequences
Seq C1 exon
GGTATAGATGAGTCTATTTTTATCAACCAGCCATTGATCTACTCTCATTTTGCTCATGGTGTGGGTGAGCCGCGTTACGCGCAGGTGACTGACCTGGAGAAGCTTCAGAAGACACTGATGGATGCTCTCGAGCACTACAATGAGCTGCACTCTGACATGAATCTGGTGCTGTTTGAGGAAGCCATGCAACACAT
Seq A exon
TTGCAGGATAAGTCGTATTCTTGAGTCTCCTGTGGGCAATGCATTGCTTATTGGAGTAGGTGGTAGTGGGAAACAGAGTCTCTGTCGGTTGGCTGCTTTTCTCAGCGTCCTTGAAGTATTTCAGATCACACTGAGAAAAGGTTACGGCATCAGCGACCTTAGG
Seq C2 exon
AGTGATATTGCTGCATTGTATATAAAGGTGGGAGTGAAGAACATTGGCACAGTCTTCCTCCACACTGATGCCCAGATTCCAGATGAAAGATTCCTGGTCCTGATCAACGACATGCTAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'47-49,'47-48,48-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(7.1=29.2)
A:
PF127802=AAA_8=FE(20.1=100)
C2:
PF127802=AAA_8=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCTCATGGTGTGGGTGAG
R:
TGTCGTTGATCAGGACCAGGA
Band lengths:
258-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]