MmuEX6091632 @ mm10
Exon Skipping
Gene
ENSMUSG00000033987 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:118060066-118067055:-
Coord C1 exon
chr11:118066891-118067055
Coord A exon
chr11:118066287-118066478
Coord C2 exon
chr11:118060066-118060332
Length
192 bp
Sequences
Splice sites
3' ss Seq
GACCCCTCTGATCTCCCCAGGTG
3' ss Score
10.2
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GATCTTGGGGAGGAGAATCTCTTTGCCAAACCCAACATCTTCTGCCACTTTACGCAAGGAATCGGTGACCCCAAGTACTTCCCCGTCACGGATGTGGCACAACTGAACAAGCTGCTGAAGGACGTCCTGGACAGTTACAACGAGGTTAACGCAGTCATGAACCTG
Seq A exon
GTGCTGTTTGAGGATGCGGTGGCTCACATCTGCAAGATCAACCGTATCCTGGAGTCTCCTCGGGGAAATGCCCTGTTGGTGGGCGTGGGTGGCAGTGGGAAGCAGAGCCTCTCGCGCCTAGCCGCCTACATCAGTGCCCTGGACGTCTTCCAGATCACACTCAAGAAAGGCTACGCAATCCCAGACCTCAAG
Seq C2 exon
ATGGACCTGGCTACCCAGTACATCAAGTCTGCGGTGAAGAACGTGCCCTCGGTGTTCCTGATGACGGACTCCCAGGTGGCCGAGGAGCAGTTCCTGGTGCTGATCAATGACTTGCTGGCCTCCGGGGAAATCCCAGGCTTGTTTGGGGACGAAGACCTTGAAAACATCATCTCCTCCATGCGGCCACAGGTGAAGTCCCTCGGTATAGCCGACACTCGAGAGGCATGCTGGAAATTCTTCATCGAGAAAGTACGCAGGCAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-'69-72,'69-71,70-72=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(3.4=16.4)
A:
PF127802=AAA_8=FE(23.5=100)
C2:
PF127802=AAA_8=FE(32.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACGTCCTGGACAGTTACA
R:
TACCGAGGGACTTCACCTGTG
Band lengths:
252-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types