RnoEX6050809 @ rn6
Exon Skipping
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107070251-107076917:-
Coord C1 exon
chr10:107076753-107076917
Coord A exon
chr10:107076249-107076440
Coord C2 exon
chr10:107070251-107070517
Length
192 bp
Sequences
Splice sites
3' ss Seq
GACCCCTCTGACCTCCCCAGGTG
3' ss Score
9.7
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GACCTCGGGGAAGAGCACCTCTTCGCCAAACCCAACATCTTCTGCCACTTTACACAAGGGATCGGGGACCCCAAGTACTTCCCCGTCACGGACGTGGCGCACCTGAACAAGCTTCTCAAAGACGTCCTGGACAGTTACAACGAAGTCAACGCGGTCATGAACCTG
Seq A exon
GTGCTGTTCGAGGACGCCGTGGCACACATCTGCAGGATCAACCGTATCCTGGAGTCCCCTCGGGGAAACGCCCTGTTGGTGGGCGTGGGTGGCAGTGGAAAACAGAGCCTGTCCCGCCTAGCCGCCTACATCAGCGCCCTGGACGTCTTCCAGATCACACTCAAGAAAGGCTATGCGATCCCAGACCTCAAG
Seq C2 exon
ATGGACCTGGCTGCCCAGTACATCAAGTCCGCGGTGAAGAACGTGCCCTCAGTATTCCTGATGACAGACTCCCAGGTGGCTGAGGAGCAGTTCCTGGTGCTGATCAACGACTTGCTAGCCTCGGGGGAAATCCCAGGCTTGTTTGGGGACGACGACCTTGAAAATATCATCTCCTCCATGCGGCCACAGGTGAAGTCTCTCGGTATGACCGACACCCGAGAGGCATGCTGGAAATTCTTCATTGAGAAAGTGCGGAAGCAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028-'59-66,'59-65,60-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(3.4=16.4)
A:
PF127802=AAA_8=FE(23.5=100)
C2:
PF127802=AAA_8=FE(32.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTTCGCCAAACCCAACAT
R:
CGTTGATCAGCACCAGGAACT
Band lengths:
257-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]