BtaEX6090373 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54372519-54375522:+
Coord C1 exon
chr19:54372519-54372683
Coord A exon
chr19:54372796-54372987
Coord C2 exon
chr19:54375256-54375522
Length
192 bp
Sequences
Splice sites
3' ss Seq
CCGCCCCGGCTTCTTTTCAGGTG
3' ss Score
9.43
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GATCTCGGTGATGAGCTCCTATTTGCCAAACCAAACATCTTCTGCCACTTTGCTCACGGGATCGGAGACCCCAAATACCTGCCGGTGACCGACCTGGCTCCGCTGAACAAGCTTCTGGTGGAAGTCCTGGACAGTTACAATGAGGTCAACGCGGTCATGAACCTG
Seq A exon
GTGCTTTTCGAGGATGCGGTGGCCCACATCTGCAGGATCAACCGCATCCTGGAGTCCCCGCGGGGTAACGCCCTGCTGGTGGGGGTGGGCGGCAGCGGCAAGCAGAGCCTCTCCCGCCTGGCCGCGTACATCAGCGCCCTGGACGTGTTCCAGATTACCCTCAAGAAGGGCTACGGGATCCCAGACCTCAAG
Seq C2 exon
CTCGACCTTGGTGCCCAGTACATCAAGTCGGCCGTGAAGAACGTTCCCTCGGTGTTCCTGATGACCGACTCCCAGGTGGCCGAGGAGCAGTTCCTGGTGCTAATCAACGACCTGCTGGCCTCGGGGGAGATCCCGGGGCTGTTCATGGATGACGAGGTGGAGAACATCATCTCCTCCATGCGGCCCCAGGTGAAGTCCCTCGGCCTGACAGATACCCGAGAGGCGTGCTGGAAGTTCTTCATTGACAAAGTGCGCAGGAACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920-'53-57,'53-56,54-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(3.4=16.4)
A:
PF127802=AAA_8=FE(23.5=100)
C2:
PF127802=AAA_8=FE(32.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTGCCACTTTGCTCACG
R:
GCAGGTCGTTGATTAGCACCA
Band lengths:
243-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]