GgaEX7009564 @ galGal4
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10087147-10087949:+
Coord C1 exon
chr18:10087147-10087311
Coord A exon
chr18:10087416-10087607
Coord C2 exon
chr18:10087683-10087949
Length
192 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCACGTTTTCCTTAGGTG
3' ss Score
11.59
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GACCTCAACGAAGAGACGGTGTTTGCCAAGCCCAACATCTACTGCCACTTCGCCGAGGGCATCAGGGAGCCCAAGTACCTGCCAGTGCCGAGCTGGCCATCACTCAACAAGCTGCTGGGAGAGGCCTTGGACAGCTACAATGAAGTCAATGCGGCAATGAACCTG
Seq A exon
GTGCTCTTTGAGGACGCAGTGTCTCACATTTGCAGAATCAGTCGGATCCTGGAGTCCCCCCGAGGCAACGCGCTGCTGGTGGGGGTGGGGGGCAGCGGGAAGCAGAGCCTTTCCCGGCTCGCTGCTTACATCAGCTCTCTAGACGTGTTTCAGATGACACTGAGGAAGGGCTATGGCATCCCAGACCTGAAG
Seq C2 exon
CTGGACCTCGCCTCGCAGTACATCAAGGCAGCCGTAAAGAACGTTCCTACAGTGTTCCTGATGACGGACTCCCAGGTGGCGGAGGAGTCGTTCTTGGTCCTGATCAATGACTTCTTGGCATCCGGGGAGGTGCCGGGGCTTTTCCAGGATGATGAATTGGAAAACATTATCAGTGCCATGAGGCCACACTTGAAGTTCCTCGGATTGCCAGACTCAAGGGAAAACTGCTGGAAATTATTTATAGAGAAGGTCAGGCGTCAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106-'58-63,'58-62,59-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(3.4=16.4)
A:
PF127802=AAA_8=FE(23.5=100)
C2:
PF127802=AAA_8=FE(32.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGCCAAGCCCAACATCT
R:
AGGACCAAGAACGACTCCTCC
Band lengths:
247-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]