HsaEX6021134 @ hg19
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11700914-11713686:+
Coord C1 exon
chr17:11700914-11701110
Coord A exon
chr17:11711049-11711211
Coord C2 exon
chr17:11713563-11713686
Length
163 bp
Sequences
Splice sites
3' ss Seq
GCCTGCTTCCTTCTCTTTAGCTG
3' ss Score
8.82
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GATATTGAAGACCCTGTGGAGCAGACCCAAAGCCCGAACCTGTATTGTCACTTTGCAAATGGTATTGGGGAGCCCAAATACATGCCTGTACAGTCTTGGGAACTTTTGACCCAGACTCTGGTGGAGGCCTTGGAGAACCACAATGAAGTCAACACAGTGATGGACCTAGTTCTCTTTGAGGATGCCATGCGCCATGT
Seq A exon
CTGCCATATCAATCGCATCTTGGAGTCCCCGCGGGGAAATGCTCTGCTGGTTGGTGTAGGTGGGAGCGGCAAGCAGAGCCTGACAAGGCTGGCAGCTTTCATCAGCTCCATGGATGTCTTCCAGATCACACTGCGCAAAGGCTACCAGATCCAGGACTTCAAG
Seq C2 exon
ATGGACCTGGCCAGCCTGTGTCTGAAAGCTGGAGTGAAGAATCTCAACACAGTGTTTCTCATGACTGATGCCCAAGTGGCTGATGAGAGGTTCCTTGTGCTCATCAATGATCTTTTGGCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'42-44,'42-43,43-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(7.1=28.8)
A:
PF127802=AAA_8=FE(20.1=100)
C2:
PF127802=AAA_8=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAAGCCCGAACCTGTATT
R:
CCACTTGGGCATCAGTCATGA
Band lengths:
251-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)