BtaEX6026617 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30575853-30579726:+
Coord C1 exon
chr4:30575853-30576047
Coord A exon
chr4:30576873-30576950
Coord C2 exon
chr4:30579590-30579726
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCTGGTTGTTCGGTCTGTAGGTT
3' ss Score
7.76
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTACTCATGAGAGCATTAAGGGACTTCAATATGCCTAAAATAGTGACTGATGACACCTCTGCGTTTTTGGGCCTCATTGGTGACCTGTTTCCATCCTTGGATGTGCCCCGGAGGAGAGCACCCCACTTTGAACAGATGGTCAGGCAGTCCACTGTGGAGCTCCGCCTGCAGCCTGAGGAAAGCTTCATCCTCAAA
Seq A exon
GTTGTTCAGCTTGAGGAGCTGTTGGCTGTGCGACACTCTGTCTTCGTCGTTGGAAATGCAGGCACAGGGAAGAGTAAG
Seq C2 exon
ATTTTGAGAACATTAAACCGAACATATGTTAACATGAAACAGAAACCCATTTGGAATGACTTAAACCCCAAAGCTGTGACAACAGATGAACTCTTCGGTTTCATACACCATGCTACCCGAGAATGGAAAGACGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'49-51,'49-50,50-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077289=AAA_5=PU(8.9=50.0)
C2:
PF077289=AAA_5=FE(30.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGCACCCCACTTTGAAC
R:
CTGTTGTCACAGCTTTGGGGT
Band lengths:
168-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]