MmuEX6083428 @ mm9
Exon Skipping
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119279436-119284182:-
Coord C1 exon
chr12:119283988-119284182
Coord A exon
chr12:119282226-119282303
Coord C2 exon
chr12:119279436-119279568
Length
78 bp
Sequences
Splice sites
3' ss Seq
TGACAGCTGTCTGTATGCAGGTT
3' ss Score
7.13
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTGCTCATGAGAGCATTGAGGGACTTTAATATGCCTAAAATTGTAACTGATGATGTCCCAGTGTTCCTGGGCCTGGTTAGCGACCTGTTTCCAGCCCTGGATGTACCTCGGCAGAGGAAACCACACTTTGAACAGATGGTCAAGCAGTCTACCCTGGAACTTCGCCTGCAGCCCGAGGAGAGCTTCATCCTCAAA
Seq A exon
GTTGTCCAGCTTGAGGAGCTACTGGCCGTGCGACACTCTGTCTTTGTGGTTGGAAATGCAGGCACAGGAAAGAGTAAG
Seq C2 exon
ATTTTGAGAACACTGAACAGAACATATGTTAACATGAAACAGAAGCCTGTTTGGAGTGACTTAAACCCCAAGGCTGTGACAACAGATGAACTCTTTGGTTTCATACATCATGCTACCCGAGAATGGAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'38-39,'38-38,39-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077289=AAA_5=PU(9.5=50.0)
C2:
PF077289=AAA_5=FE(32.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAGAGGAAACCACACTTT
R:
GTTGTCACAGCCTTGGGGTTT
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: