MmuEX6083428 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118040963-118045709:-
Coord C1 exon
chr12:118045515-118045709
Coord A exon
chr12:118043753-118043830
Coord C2 exon
chr12:118040963-118041095
Length
78 bp
Sequences
Splice sites
3' ss Seq
TGACAGCTGTCTGTATGCAGGTT
3' ss Score
7.13
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTGCTCATGAGAGCATTGAGGGACTTTAATATGCCTAAAATTGTAACTGATGATGTCCCAGTGTTCCTGGGCCTGGTTAGCGACCTGTTTCCAGCCCTGGATGTACCTCGGCAGAGGAAACCACACTTTGAACAGATGGTCAAGCAGTCTACCCTGGAACTTCGCCTGCAGCCCGAGGAGAGCTTCATCCTCAAA
Seq A exon
GTTGTCCAGCTTGAGGAGCTACTGGCCGTGCGACACTCTGTCTTTGTGGTTGGAAATGCAGGCACAGGAAAGAGTAAG
Seq C2 exon
ATTTTGAGAACACTGAACAGAACATATGTTAACATGAAACAGAAGCCTGTTTGGAGTGACTTAAACCCCAAGGCTGTGACAACAGATGAACTCTTTGGTTTCATACATCATGCTACCCGAGAATGGAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'47-48,'47-47,48-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077289=AAA_5=PU(9.5=50.0)
C2:
PF077289=AAA_5=FE(32.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAGAGGAAACCACACTTT
R:
GTTGTCACAGCCTTGGGGTTT
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types